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Publications

Total number : 45

Cumulative Impact factor : 137.569

Cumulative citations: 884

h-index : 13

i10 index: 15

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Journals

S Sur*, M Ghosh & R Rai (2023). In silico immunoinformatics based prediction and designing of multi-epitope construct against human rhinovirus C. Acta Biologica Szegediensis 67(1): 11-23. *Corresponding author

S Sur*, T Patra, M Karmakar & A Banerjee (2023). Mycobacterium abscessus: insights from a bioinformatic perspective. Critical Reviews in Microbiology 49 (4): 499-514. * Corresponding author

S Sur (2022). The pangenome structure of human pathogen Mycobacterium kansasii. Acta Biologica Szegediensis 66 (2): 192-201.

O Kumpf, K Gürtler, S Sur, M Parvin, LK Zerbe, J Eckert, ANR Weber, DY Oh, L Lundvall, L Hamann & RR Schumann (2021). A Genetic Variation of LPS Binding Protein (LBP) Affects the Inflammatory Response and is Associated with Improved Outcome during Sepsis. ImmunoHorizons 5:972-982.

S Sur* & B Pal (2021). Comprehensive review of Mycobacterium ulcerans and Buruli ulcer from a bioinformatics perspective – what have we learnt? Acta Biologica Szegediensis 65:233-245. * Corresponding author

S Sur (2021). Understanding the nature and dynamics of Mycobacterium ulcerans cytochrome P450 monooxygenases (CYPs) – a bioinformatics approach. Acta Biologica Szegediensis 65:93-103.

S Thada, G Horvath, MM Müller, N Dittrich, ML Conrad, S Sur, A Hussain, K Pelka, SL Gaddam, E Latze, H Slevogt, RR Schumann & S Burkert (2021). Interaction of TLR4 and TLR8 in the innate immune response against Mycobacterium tuberculosis. International Journal of Molecular Sciences 22:1560.

S Sur (2020). In-Silico analysis reveals interrelation of enriched pathways and genes in Type 1 diabetes. Immunogenetics 72:399-412.

S Thada, S Burkert, R Sivangala, A Hussain, S Sur, N Dittrich, ML Conrad, H Slevogt, SL Gaddam & RR Schumann (2020). A SNP upstream of the cyclic GMP-AMP synthase (cGAS) gene protects from relapse and extra-pulmonary TB and relates to BCG vaccination status in an Indian cohort. Genes and Immunity 21: 13-26.

M Ugolini, J Gerhard, S Burkert, KJ Jensen, P Georg, F Ebner, S Volkers, S Thada, K Dietert, L Bauer, A Schäfer, ET Helbig, B Opitz, F Kurth, S Sur, N Dittrich, S Gaddam, ML Conrad, CS Benn, U Blohm, AD Gruber, A Hutloff, S Hartmann, MV Boekschoten, M Müller, G Jungersen, RR Schumann, N Suttorp & LE Sander (2018). Recognition of microbial viability via TLR8 drives TFH cell differentiation and vaccine responses. Nature Immunology 19: 386-396.

T Horn, S Adel, RR Schumann, S Sur, KR Kakularam, A Polamarasetty, P Redanna, H Kuhn & D Heydeck (2015). Evolutionary aspects and human diversity of leukotriene signaling. Progress in Lipid Research 57: 13-39.

N Dittrich, LC Berrocal-Almanza, S Goyal, S Thada, H Slevogt, S Gaddam, A Hussain, S Sur, S Burkert, V Valluri, DY Oh, RR Schumann & ML Conrad (2015). Toll-like receptor 1 variations influence susceptibility and immune response to Mycobacterium tuberculosis. Tuberculosis 95: 328-335.

S Sur*, S Saha, LS Tisa, AK Bothra & A Sen (2013). Characterization of pseudogenes in members of the order Frankineae. Journal of Biosciences 38: 727-732. * Corresponding author

L Hamann, A Koch, S Sur, N Hoefer, C Glaeser, S Schulz, M Gross, A Franke, U Nöthlings, K Zacharowski & RR Schumann (2013). Association of a common TLR-6 Polymorphism with Coronary Artery Disease – Implications for healthy ageing? Immunity and Ageing 10:43.

JK Eckert, YJ Kim, JI Kim, K Gürtler, DY Oh, S Sur, L Lundvall, L Hamann, A van der Ploeg, P Pickkers, E Giamarellos-Bourboulis, AV Kubarenko, AN Weber, M Kabesch, O Kumpf, HJ An, JO Lee & RR Schumann (2013). The Crystal Structure of Lipopolysaccharide Binding Protein reveals the Location of Frequent Mutation that Impairs Innate Immunity. Immunity 39: 647-660.

LG Wall, N Beauchemin, MN Cantor, E Chaia, A Chen, JC Detter, T Furnholm, FG Gtari, L Goodwin, M Gtari, C Han, J Han, M Huntemann, SX Hua, N Ivanova, N Kyrpides, V Markowitz, K Mavrommatis, N Mikhailova, HP Nordberg, I Nouioui, G Ovchinnikova, I Pagani, A Pati, A Sen, S Sur, E Szeto, S Thakur, CL Wei, T Woyke & LS Tisa (2013). Draft Genome sequence of Frankia sp. strain BCU110501, a nitrogen-fixing actinobacterium isolated from nodules of Discaria trinevis. Genome Announcements 1(4): e00503-13.

I Nouioui, N Beauchemin, MN Cantor, A Chen, JC Detter, T Furnholm, FG Gtari, L Goodwin, M Gtari, C Han, J Han, M Huntemann, SX Hua, N Ivanova, N Kyrpides, V Markowitz, K Mavrommatis, N Mikhailova, HP Nordberg, G Ovchinnikova, I Pagani, A Pati, A Sen, S Sur, E Szeto, S Thakur, L Wall, CL Wei, T Woyke & LS Tisa (2013). Draft Genome sequence of Frankia sp. strain BMG5.12, a nitrogen-fixing actinobacterium isolated from Tunisian soils. Genome Announcements 1(4): e00468-13.

S Sur, AK Bothra & A Sen (2013). Proteome analysis reveals the influence of isoelectric point and amino acid usages on the lifestyle of nitrogen fixing microorganisms. Indian Journal of Biotechnology 12: 88-97.

A Sen, N Beauchemin, D Bruce, P Chain, A Chen, KW Davenport, S Deshpande, C Detter, T Furnholm, F Ghodbhane-Gtari, L Goodwin, M Gtari, C Han, J Han, M Huntemann, N Ivanova, N Kyrpides, ML Land, V Markowitz, K Mavrommatis, M Nolan, I Nouioui, I Pagani, A Pati, S Pitluck, C Santos, S Sur, E Szeto, F Tavares, H Teshima, S Thakur, L Wall, J Wishart, T Woyke & LS Tisa (2013). Draft Genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida. Genome Announcements 1(2): e00103-13.

F Ghodbhane-Gtari, N Beauchemin, D Bruce, P Chain, A Chen, KW Davenport, S Deshpande, C Detter, T Furnholm, L Goodwin, M Gtari, C Han, J Han, M Huntemann, N Ivanova, N Kyrpides, ML Land, V Markowitz, K Mavrommatis, M Nolan, I Nouioui, I Pagani, A Pati, S Pitluck, C Santos, A Sen, S Sur, E Szeto, F Tavares, H Teshima, S Thakur, L Wall, T Woyke & LS Tisa (2013). Draft Genome sequence of Frankia sp. strains CN3, an atypical, non-infective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis. Genome Announcements 1(2): e00085-13.

S Saha, S Sur, AK Bothra & A Sen (2012). A homology model for 16SrRNA tertiary structure of Frankia. NBU Journal of Plant Sciences 6: 89-94.

A Sen, S Thakur, AK Bothra, S Sur & LS Tisa (2012). Identification of TTA codon containing genes in Frankia and exploration of the role of tRNA in regulating these genes. Archives of Microbiology 194: 35-45.

S Sur, AK Bothra, TC Ghosh & A Sen (2010). Investigation of the molecular evolution of nitrogen fixation using nucleotide triplet based condensed matrix method. International Journal of Integrative Biology 10:59-65.

AK Goyal, A Sen, S Sur & AK Bothra (2010). Exploration of codon usage patterns in some Brucella genomes. International Journal of Pharma and Biosciences 1 (4): B239-B252.

S Sur, A Sen & AK Bothra (2010). Symbiotic nitrogen fixation-a bioinformatics perspective. Biotechnology 9: 257-273.

S Thakur, AK Bothra, S Sur & A Sen (2010). Modeling and molecular dynamics simulation of PR-1 protein an integral part of plant defense. International Journal of Biological and Chemical Sciences 4:1251-1261.

A Sen, S Sur, LS Tisa, AK Bothra, S Thakur & UK Mondal (2010). Homology modelling of the Frankia nitrogenase iron protein. Symbiosis 50:37-44.

S Sur, G Sen, S Thakur, AK Bothra & A Sen (2009). In silico analysis reveals that swine flu viruses evolved with promulgation and mutation by re-assortment of their genomes. Biotechnology 8:434-441.

S Thakur, S Sur, D Bose, AK Goyal, T Mishra, R Rai, M Bhattacharya, AK Bothra & A Sen (2009). Molecular modelling of a pathogenesis related protein from Solanum tuberosum. NBU Journal of Plant Sciences 3: 15-19.

S Sur, B Bajwa, M Bajwa, B Bashistha, AK Bothra & A Sen (2009). Investigation of codon and amino-acid usages in a Rhizobium phage. NBU Journal of Plant Sciences 3: 49-51.

S Sur, AK Bothra, M Bajwa, LS Tisa & A Sen (2008). In Silico analyses of Chlorobium genomes divulge insights into the lifestyle of the bacteria. Research Journal of Microbiology 3 (10): 600-613.

UK Mondal, S Sur, AK Bothra & A Sen (2008). Comparative analysis of codon usage patterns and prediction of highly expressed genes in five Salmonella genomes. Indian Journal of Medical Microbiology 26 (3): 217-221.

S Sur, M Bhattacharya, AK Bothra, LS Tisa & A Sen (2008). Bioinformatic analysis of codon usage patterns in a free living diazotroph, Azotobacter vinelandii. Biotechnology 7:242-249.

A Sen, S Sur, AK Bothra, DR Benson, P Normand & LS Tisa (2008). The implication of life style of codon usage patterns and predicted highly expressed genes for three Frankia genomes. Antonie van Leewenhoek International Journal of General and Molecular Microbiology 93: 335-346.

S Sur, A Sen & AK Bothra (2007). Mutational drift prevails over translational efficiency in nif operons of Frankia. Indian Journal of Biotechnology (6): 321-328.

G Sen, S Sur, D Bose, U Mondol, T Furnholm, AK Bothra, LS Tisa & A Sen (2007). Analysis of codon usage patterns and predicted highly expressed genes for six phytopathogenic Xanthomonas genomes shows a high degree of conservation. InSilico Biology International Journal of Computational Molecular Biology 7 (4, 5): 547-558.

D Bose, S Sur, AK Bothra & A Sen (2007). Study of the diversity of the heavy metal resistance genes and their codon usage profiling. ICFAI Journal of Biotechnology 1(3): 49-58.

S Sur, A Sen & AK Bothra (2007). Codon usage analysis of some archaeal (methanogenic) nitrogen fixing genes: relationship to gene expression and biasness. Bioinformatics Trends 2: 47-60.

UK Mondol, S Sur, A Sen & AK Bothra (2007). Codon Volatility: An Efficient Tool to Detect the Purity of Genes. ICFAI Journal of Biotechnology 1(2): 45-49.

S Sur, A Sen & AK Bothra (2006). Codon usage profiling and analysis of intergenic association of Frankia EuIK1 nif genes. Indian Journal of Microbiology 46 (4): 363-369.

S Sur, A Pal, AK Bothra & A Sen (2005). Moderate codon bias attributed to translational selection in nitrogen fixing genes of Bradyrhizobium japonicum USDA110. Bioinformatics India 3(2): 59-64.

A Mandal, S Chatterjee & S Sur (2024). Practical Botany for Postgraduate students -Volume 1. ISBN: 978-81-958027-0-8. 

Read the Paper

R Rai, P Bantawa & S Sur (2014). Trends in biochemical and molecular characterization of rhizobia and their nitrogen fixing mechanism: a review. In Biology of Useful Plants and microbes, Ed. A Sen, Narosa Publishing House, New Delhi India Chapter 5, 61-119.

B Bajwa, M Gill, S Sur, AK Bothra & A Sen (2008). Molecular Systematics of Frankia-Actinorhizal Symbiosis. In Microbial Biotechnology, Ed. R. Salkia, New India Publishing Agency, Chapter 15, 377-405.

MK Ghosh, S Sur & A Sen (2007). Nitrogen fixation in various microorganisms with special reference to Frankia. In Rhizosphere Biotechnology: Plant Growth-Retrospect and Prospect, Ed. A.K. Roy, Scientific Publishers, Chapter 15, 167-182.

GenBank submission (Genome Projects)

Lucas, S…………. Sur, S et al. (2011). Frankia sp. EuI1c chromosome, complete genome. 

Books/Book Chapters

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